Harvey's Blog

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Harvey's Blog

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Bioinformatics

A Third Generation Sequencing Data Analysis Pipeline

Comparison of alignment tools for single-cell RNA sequencing

Comparison of RNA velocity methods for droplet scRNA-seq data

How to Solve `Error in .vsc.attach() ： could not find function .vsc.attach` in Radian

Integration of Radian, Reticulate, and Targets in R

Machine Learning Cheat Sheet

My R Package Collection

nf-core tutorial

Password Error when Unzipping multiple parts RAR

Sequencing Depth and Coverage in RNA-Seq

Solutions for Using VS Code Remote-SSH on Legacy Linux Systems

Which GTF and Fasta version to use

Books

The Armchair Economist (revised and updated May 2012) Economics & Everyday Life-Landsburg, Steven E.

不被理解的毛泽东-虚声

临高启明-吹牛者

围城-钱钟书-40401007

平面国（果麦经典）-埃德温·艾勃特

筚路维艰：中国社会主义路径的五次选择-萧冬连

青囊尸衣-鲁班尺

鬼吹灯（盗墓者的经历）-本物天下霸唱

Life

【404文库】与市场共舞｜经济学家付鹏在HSBC演讲速记

为什么美国的餐饮小票都要打上税额？

台湾的国际法定位 - 马英九

向毛主席和周总理提些意见（储安平）

四种文革叙事与历史真相

木白文笔平平｜因为评论银行取款难的问题，南方系媒体又被骂

极昼工作室｜监控里的农村智残女性：44岁生下第三个孩子

劳务宏观笔记｜统计局最新数据：女性的无酬劳动时间是男性的1.9倍

英耀赋全文

【404文库】新新默存｜血案背后，20起报复社会事件的惊人相似性

魏春亮说｜警察殴打小学生事件，反转了？

计划生育政策还要存在多久？

Music

Ⅲ.编曲原理02 - 为旋律设计主节奏

吉他常用节奏型

如何写好旋律（二）关于重复和对比（以及敢于对先锋派说不）

木吉他演奏的一般规律

School

template

USMLE

Biochemistry

Adenosine deaminase deficiency

Adrenoleukodystrophy

Arsenic toxicity

Autosomal dominant diseases

Autosomal trisomies

Catabolism of amino acids

Catecholamine Synthesis

Cystic fibrosis

De novo pyrimidine and purine synthesis

Endoplasmic reticulum

Extracellular matrix

Familial dyslipidemias

Fatty acid oxidation

Fatty acid synthesis

Folate deficiency

Fructose Metabolism

Galactose metabolism

General oncology

Gluconeogenesis

Glycogen storage diseases

Interferons and Tumor necrosis factor

Intracellular receptors

Ketone body synthesis

Lesch-Nyhan syndrome

Lipid digestion

Lipid transport

Lysosomal Storage Diseases

Maple syrup urine disease

Marfanoid features

Metabolic fuel use

Metabolism sites

Mitochondrial myopathies

Organic acidemias

Orotic aciduria

Permissive action

Phenylketonuria

Prader-Willi syndrome and Angelman syndrome

Primary ciliary dyskinesia

Prostaglandin vs Prostacyclin

Pyruvate dehydrogenase complex deficiency

Pyruvate metabolism

RNA polymerases

Signal transduction

Start and stop codons

Trinucleotide repeat expansion diseases

Water-soluble vitamins

Zellweger syndrome

Zinc deficiency

Blood

Acute intermittent porphyria

Alkaline phosphatase

Anticancer therapy-induced neutropenia

Aplastic anemia

Autoimmune hemolytic anemia

Chemotherapeutic agents

Cholesterol embolization syndrome

Chronic myeloid leukemia

Coagulation disorders

Cryoglobulinemic vasculitis

Cyanide poisoning

Drug-induced hemolytic anemia

Eosinophilic granulomatosis with polyangiitis

Erythrocyte morphology and hemoglobin

Glucose-6-phosphate dehydrogenase deficiency

Granulomatosis with polyangiitis

Hairy cell leukemia

Hemochromatosis

Hemoglobin Barts

Hemoglobin C disease

Hemoglobin variants

Hemolytic anemia

Hemolytic disease of the fetus and newborn

Hemolytic uremic syndrome

Heparin-induced thrombocytopenia

Hereditary spherocytosis

Hodgkin lymphoma

Immune thrombocytopenia (ITP)

Inhibition of hemostasis

Iron deficiency anemia

Jaundice and cholestasis

Lab findings of hemolysis

Leukocyte alkaline phosphatase

Multiple myeloma

Mycosis fungoides

Myelodysplastic syndromes

Myeloproliferative neoplasms

Non-Hodgkin lymphomas

Nucleated red blood cells

Paroxysmal nocturnal hemoglobinuria

Platinum-based agents

Pleural effusion

Polycythemia vera

Polymorphonuclear leukocytes

Primary myelofibrosis

Pure red cell aplasia

Pyruvate kinase deficiency

Sickle cell disease

Sideroblastic anemia

Sézary syndrome

Thrombotic thrombocytopenic purpura

Transfusion reactions

Vitamin K deficiency bleeding of the newborn

Von Willebrand disease

Books

The Only EKG book

Cardiology

Abdominal aortic aneurysm

Acute coronary syndrome

Acute rheumatic fever

Aortic dissection

Aortic valve stenosis

Ashman phenomenon

Atherosclerosis

Atrial fibrillation

Atrial septal defect

Atrioventricular block

Atrioventricular septal defect

Baroreceptors and chemoreceptors

Blunt thoracic aortic injury

Calcium Channel

Cardiac auscultation

Cardiac glycosides

Cardiac physiology

Cardiac transplatation

Cholesterol embolization syndrome

Chronic venous disease

Coarctation of the aorta

Coronary arteries

Coronary artery bypass grafting

Coronary artery disease

Dilated cardiomyopathy

Drug-induced lupus erythematosus

ectopic atrial rhythm

Genetic diseases associated with cardiac defects

Hypertensive crises

Hypertrophic cardiomyopathy

Infective endocarditis

Isolated systolic hypertension

Cardiovascular examination

Lipid-lowering agents

Long QT syndromes

Löffler endocarditis

Mitral regurgitation

Mitral valve prolapse

Mitral valve stenosis

Noninfective endocarditis

Pericardial effusion and cardiac tamponade

Acute pericarditis

Premature ventricular contractions

Pressure-volume loop

Pulmonary capillary wedge pressure

Pulsus paradoxus

Renal artery stenosis

Restrictive cardiomyopathy

Sick sinus syndrome

Subclavian steal syndrome

Supraventricular tachycardia

Takotsubo cardiomyopathy

Tetralogy of Fallot

Torsades de pointes

Transposition of the great vessels

Ventricular septal defect

Endocrine

Adrenal insufficiency

Anabolic and Catabolic effects

Carcinoid tumor

Congenital adrenal hyperplasia

Cushing syndrome

Diabetes mellitus

Diabetic gastroparesis

Diabetic neuropathy

Euthyroid sick syndrome

Familial hypocalciuric hypercalcemia

Glucose transporters

Hashimoto thyroiditis

Hyperglycemic crises

Hyperparathyroidism

Hyperprolactinemia

Hyperthyroidism

Hypopituitarism

Multiple endocrine neoplasias

Nonpitting edema

Obesity and metabolic syndrome

Pancreatic neuroendocrine tumors

Pituitary adenoma

Primary hyperaldosteronism

Riedel thyroiditis

Stress hyperglycemia

Subacute thyroiditis

Toxic multinodular goiter

GI

Acute appendicitis

Acute cholecystitis

Acute mesenteric ischemia

Acute pancreatitis

Alcohol use disorder

Alcoholic hepatitis

Alcoholic liver disease

Atrophic gastritis

Autoimmune hepatitis

Benign liver tumors and hepatic cysts

Budd-Chiari syndrome

Choledocholithiasis

Chronic pancreatitis

Colorectal cancer

Congenital neck masses

Dieulafoy lesion

Eosinophilic esophagitis

Erosive gastritis

Esophageal cancer

Esophageal diverticula

Esophageal motility disorders

Gastroesophageal reflux disease

Halothane hepatitis

Hepatic encephalopathy

Hepatocellular carcinoma

Hirschsprung disease

Intestinal atresia

Intraperitoneal and extraperitoneal abdominal structures

Intrinsic factor

Intussusception

Irritable bowel syndrome

Lactose intolerance

Mallory-Weiss syndrome

Medication-induced esophagitis

Mirizzi syndrome

Ménétrier disease

Necrotizing enterocolitis

Nonalcoholic fatty liver disease

Pancreatic cancer

Peptic ulcer disease

Plummer-Vinson syndrome

Primary biliary cholangitis

Primary sclerosing cholangitis

Proton pump inhibitors

Pyogenic liver abscess

Small intestinal bacterial overgrowth

Stomach histology

Stool osmotic gap

Toxic megacolon

Ulcerative colitis

Whipple disease

Immunology

Antineutrophil cytoplasmic antibodies

Chronic granulomatous disease

Chédiak-Higashi syndrome

Complement system

Congenital immunodeficiency disorders

DiGeorge syndrome

Granulomatous inflammation

Hyper-IgE syndrome

Hyper-IgM syndrome

IL-12 receptor deficiency

Immunoglobulins

Immunosuppressants

Leukocyte adhesion deficiency type 1

Leukocyte extravasation

Neutropenic fever

Respiratory burst

Selective IgA deficiency

Severe combined immunodeficiency

Systemic lupus erythematosus

Transplant rejection

Type I hypersensitivity reaction

Type III hypersensitivity reactions

Type IV hypersensitivity reaction

Waxing and Waning

Wiskott-Aldrich syndrome

X-linked (Bruton) agammaglobulinemia

Infective disease

Actinomyces israelii

Acute tonsillitis and pharyngitis

Antiparasitic drugs

Antiviral therapy

Bacillus anthracis

Bacterial cultures

Cat scratch disease

Chikungunya fever

Clostridium difficile infection

Congenital TORCH infections

Coxsackievirus infections

Cytomegalovirus infection

Escherichia coli

Gray-white exudates of throat

Haemophilus influenzae

HIV-associated conditions

Hookworm infections

Human immunodeficiency virus

Human papillomavirus infection

Infection prevention and control

Infectious gastroenteritis

Infectious mononucleosis

Intestinal parasites

Legionnaires' disease

Morphology of fungi

Pasteurella multocida

Recurrent respiratory papillomatosis

Schistosomiasis

Signaling pathways of exotoxins

Staphylococcus aureus

Staphylococcus epidermidis

Streptococcus pneumoniae

Streptococcus pyogenes

Strongyloidiasis

Tick-borne diseases

Toxic shock syndrome

Transmission of common infections

Typhoid and paratyphoid fever

Waterhouse-Friderichsen syndrome

Zika virus infection

MSK

Acanthosis nigricans

Acute compartment syndrome

Acute otitis media

Allergic contact dermatitis

Ankylosing spondylitis

Antiphospholipid syndrome

Atopic dermatitis

Autoimmune blistering diseases

Avascular necrosis

Basal cell carcinoma

Bone metastasis

Bone remodeling

Calcium pyrophosphate deposition disease

Cutaneous squamous cell carcinoma

Degenerative disk disease

Dermatitis herpetiformis

Dupuytren contracture

Ecthyma gangrenosum

Erythema differential diagnostics

Erythema multiforme

Erythema nodosum

Eustachian tube dysfunction

Femoral neck fracture

Fibromuscular dysplasia

Finger injuries

Giant cell arteritis

Greater trochanteric pain syndrome

Hidradenitis suppurativa

Humerus fractures

Hyperkinetic movements

Idiopathic inflammatory myopathies

Kawasaki disease

Langerhans cell histiocytosis

Legg-Calvé-Perthes disease

Lower Extremity Nerves

Lumbar Orthopaedic Tests

Median nerve neuropathy

Meralgia paresthetica

Migratory arthritis

Molluscum contagiosum

Motor neuron action potential to muscle contraction

Myasthenia gravis

Myositis ossificans

Myotonic syndromes

Oral white lesions

Osteogenesis imperfecta

Paralytic strabismus

Peripheral arterial disease

Piriformis syndrome

Pityriasis rosea

Polyarteritis nodosa

Polymyalgia rheumatica

Precancerous skin lesions

Progressive muscular dystrophies

Purpura differential diagnosis

Radial head subluxation

Reactive arthritis

Retinal hemorrhage

Retinitis pigmentosa

Rheumatoid arthritis

Roseola infantum

Seborrheic keratosis

Septic arthritis

Sjogren syndrome

Spasticity (Clonus) vs Rigidity

Spinal infections

Spinal stenosis

Staphylococcal scalded skin syndrome

Stevens-Johnson syndrome

Stress fractures

Systemic sclerosis

Takayasu arteritis

Temporomandibular joint disorders

Thoracic outlet syndrome

Thromboangiitis obliterans

Tinea versicolor

Trendelenburg sign

Ulnar nerve entrapment

Vascular diseases of the retina

Xeroderma pigmentosum

Neurology

Acoustic neuroma

Age-related macular degeneration

Amyotrophic lateral sclerosis

Anticonvulsant drugs

Ataxia-telangiectasia

Benign paroxysmal positional vertigo

Brachial plexus

Brain herniation

Brainstem syndromes

Carotid sinus syndrome

Cauda equina syndrome

Cavernous sinus syndrome

Cerebrospinal fluid analysis

Charcot-Bouchard aneurysms vs Saccular (berry) aneurysms

Chiari malformations

Cranial nerves and vessel pathways

Creutzfeldt-Jakob disease

Dopaminergic pathway

Empty sella syndrome

Epidural hematoma

Essential tremor

Exercise-associated postural hypotension

Extrapyramidal tracts

Facial nerve palsy

Febrile seizures

Friedreich ataxia

Frontotemporal dementia

Functional tremor

Generalized epilepsy in childhood

Gerstmann syndrome

Guillain-Barré syndrome

Herpes simplex encephalitis

Horner syndrome

Huntington disease

Idiopathic intracranial hypertension

Inguinal hernia

Inhalant-related disorders

Inhalational anesthetics

Internal capsule

Internuclear ophthalmoplegia

Intracerebral hemorrhage

Intracranial hemorrhage

Intravenous anesthetics

Ischemic stroke

Malignant hyperthermia

Medulloblastoma

Meniere disease

Multiple sclerosis

Nerves of the ear

Neurocutaneous disorders

Neuroloy physioloy

Neurotransmitters

Normal pressure hydrocephalus

Oculomotor nerve palsy (III)

Opioid overdose

Parkinson disease

Physical fundamentals of conduction

Pupillary light reflex

Radial neuropathies

Regional anesthesia

Restless legs syndrome

Retinal vessel occlusion

Seizures and epilepsy

Sensory receptors

Serotonin syndrome

Syndrome of inappropriate antidiuretic hormone secretion

Trigeminal nerve palsy

Trigeminal neuralgia

Trochlear nerve palsy

Upper motor neuron (UMN) injury vs. lower motor neuron (LMN) injury

Vascular dementia

Vasovagal syncope

Weber test and Rinne test

Wernicke encephalopathy and Korsakoff syndrome

Pathology

Acute phase reactants

Cellular adaptations

Ehlers-Danlos syndrome and Marfan syndrome

Hereditary cancer syndromes

Li-Fraumeni syndrome

Lymphadenopathy

Mercury toxicity

Periodic acid–Schiff reaction

Radiation therapy

Skeletal muscle fibers

Pharmacology

Acetaminophen poisoning

Adverse drug reactions

Antiarrhythmic drugs

Antiplatelet agents

Beta-2 adrenergic agonists

Calcium channel blockers

Cholinergic poisoning

Clinical trials

Corticosteroids

Cytochrome P450

Drug reaction with eosinophilia and systemic symptoms

Drug tolerance and tachyphylaxis

Drug-induced visual changes

Hypothalamic and pituitary drugs

Intravenous fluid therapy

Muscarinic antagonists

Non-opioid analgesics

Pain management

Parasympathomimetic drugs

Pharmacokinetics

Phosphodiesterase inhibitors

Receptor binding

Reproductive system drugs

Salicylate poisoning

Skeletal muscle relaxants

Sympatholytic drugs

药理学口诀

Psychiatry

Alcohol withdrawal

Alzheimer disease

Anorexia nervosa

Antidepressants

Anxiety disorders

Attention deficit hyperactivity disorder

Autism spectrum disorder

Bipolar disorder

Body dysmorphic disorder

Bulimia nervosa

Cannabis-induced disorders

Disruptive, impulse-control, and conduct disorders

Dissociative disorders

Drug addiction and dependence

Electroconvulsive therapy

Fetal alcohol syndrome

Gender dysphoria

Insomnia disorder

Major depressive disorder

Neuroleptic malignant syndrome

Obsessive-compulsive disorder

Opioid withdrawal

Paraphilic disorders

Personality disorders

Postpartum depression

Psychiatric drug poisoning

Psychoactive drug intoxication and withdrawal

Reaction formation

Schizoaffective disorder

Sedative-hypnotic drugs

Shaken baby syndrome

Sleep and sleep disorders

Somatic symptom and related disorders

Tourette syndrome

Transtheoretical model of change

Trauma- and stressor-related disorders

Public health

Approach to treatment refusal

Assessment of decision-making capacity

Bias and study errors

Communicating with deaf & hard of hearing patients

Ethics of communicating medical information

Grief and end-of-life counseling

Health care system

High-altitude illnesses

Informed consent

Intimate partner violence

Odds Ratio vs Relative Risk

Parental consent for minors

Patient communication and counseling

Patient-clinician relationships

Precision vs accuracy

Preventive medicine

Surrogate decision-making

Treatment adherence

Renal

Acute kidney injury

Acute tubulointerstitial nephritis

Benign prostatic hyperplasia

BUN-creatinine ratio

Chronic kidney disease

Chronic tubulointerstitial nephritis

Crystalline nephropathies

Diabetes insipidus

Diabetic kidney disease

Diagnostic evaluation of the kidney and urinary tract

Diffuse proliferative glomerulonephritis

Distal renal tubular acidosis (type 1)

Drug-induced renal disease

Focal segmental glomerulosclerosis

Fractional excretion of sodium

Genitourinary trauma

Gitelman syndrome

Glomerular diseases

Goodpasture syndrome

Horseshoe kidney

IgA nephropathy

Immunofluorescence

Intermittent catheterization

Liddle syndrome

Membranoproliferative glomerulonephritis

Membranous nephropathy

Minimal change disease

Nephritic syndrome

Nephrolithiasis

Nephrotic syndrome

NSAIDs-induced renal diseases

Parathyroid hormone-related protein

Polycystic kidney disease

Posterior urethral valves

Poststreptococcal glomerulonephritis

Potter sequence

Prostate cancer

Prostate-specific antigen

Proximal renal tubular acidosis (type 2)

Rapidly progressive glomerulonephritis

Renal cell carcinoma

Renal papillary necrosis

Renal physiology

Renal tubular disorders

Rhabdomyolysis and crush syndrome

Serum anion gap

Stress incontinence

Tubulointerstitial diseases

Tumor lysis syndrome

Urachal abnormalities

Ureteropelvic junction obstruction

Urethral injuries

Urge incontinence

Urinary incontinence

Urinary tract cancer

Urinary tract infections

Urine osmolality

Urine specific gravity

Vesicoureteral reflux

Reproductive

Abnormal placentation

Abnormal uterine bleeding

Abnormalities of the male urethra and webbed penis

Accessory nipples

Alpha fetoprotein

Androgen and estrogen synthesis

Antepartum hemorrhage

Cervical cancer

Child development and milestones

Choriocarcinoma

Cleft lip and cleft palate

Congenital diaphragmatic hernias

Development of the reproductive system

Diabetes mellitus in pregnancy

Differences (disorders) of sex development

Ectopic pregnancy

Embryologic derivatives

Endometrial cancer

Fat necrosis of the breast

Fibrocystic breast changes

Fragile X syndrome

Granulosa cell tumor

Group B streptococcus screening and prophylaxis

Holoprosencephaly

Human chorionic gonadotropin

hydatidiform mole

Hypertensive pregnancy disorders

Hypertrophic pyloric stenosis

Induced abortion

Infant nutrition and breastfeeding

Infantile hemangioma

Intraductal papilloma

Intrauterine adhesions

Ligaments of the female pelvis

Mammary duct ectasia

Maternal complications during pregnancy

McCune-Albright syndrome

Meckel diverticulum

Menstrual cycle

Neonatal jaundice

Neural tube defects

Nipple discharge

Oligohydramnios

Ovarian torsion

Pelvic inflammatory disease

Pelvic organ prolapse

Polycystic ovary syndrome

Postpartum hemorrhage

Premature ovarian failure

Preterm labor and birth

Pulmonary edema

Retinopathy of prematurity

Secondhand smoke

Selective estrogen receptor modulators

Sexual dysfunction

Spontaneous abortion

Sudden infant death syndrome

Testicular torsion

Testicular tumors

Uterine leiomyoma

Respiratory

Acute respiratory distress syndrome

Alpha-1 antitrypsin deficiency

Amniotic fluid embolism

Chronic obstructive pulmonary disease

flow-volume loop

Hypersensitivity pneumonitis

Interstitial lung diseases

Methemoglobinemia

Neonatal respiratory distress syndrome

Obstructive sleep apnea

Oxygen dissociation curve

Paraneoplastic syndromes

Pulmonary alveolar proteinosis

Pulmonary auscultation

Pulmonary embolism

Pulmonary function testing

Pulmonary hypertension

Respiratory physiology

Superior vena cava syndrome

Work of breathing

REVIEW

Calcium-related proteins

Cellular Locations

Lymph node drainage

Microscopic Features of Malignant Cells

Monoclonal antibodies

Muscle Origin & Insertion

Strandness of virus

Tumor grade vs stage

Vascular wall changes

Ultrasound

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Urethral injuries

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